Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015804530.1_cds_XP_016489204.1_7954
CDS Infomation

[gene=LOC107809119] [db_xref=GeneID:107809119] [protein=histone deacetylase 5-like] [protein_id=XP_016489204.1] [location=join(15047..15193,15693..15839,15947..16059,16361..16572,17615..17679,17877..18047,18252..18338,19837..19951,20047..20168,20707..20900,21054..21183,22342..22406,22511..22676)] [gbkey=CDS]
Sequence

ATGGGTATATTGACTGATAATCGTGTTTTTTTTTTTGGGNAAAAAATTGGTTTAAAAAGA
AATAAGATTGCTGCTAAGTTTAATTCCATATATTTCAACGAAGGCTCTTCAGAAGCTGCT
TATCTTTCTGCTGGTTCTGTCGTACAGGTTGCTGAGAAAGTTGCTGAAGGAGAACTAGAC
TCTGCCTTTGCCGTTGTTAGGCCTCCTGGACATCATGCTGAAGAAAATGAACCAATGGGA
TTTTGTTTGTACAACAATGTTGCTATAGCAGCACGTTATCTCTTGGATGAAAGACATGAT
TTGGGGATTAAGAAAATTTTGATTGTTGATTGGGATGTCCATCATGGAAATGGCACTCAA
AAGATGTTCTGGGATGACCCTCGAGTACTCTTTTTTTCTGTGCATAGGCACGATTTTGGA
AGTTTTTATCCTGGTGGTGAAGATGGGTCACATGTCATGACTGGTGAAGGGCCAGGAGCA
GGATATAATATAAATGTTCCTTGGGAGAATGGCCGCTGTGGTGATGCAGACTATCTTGCT
GTGTGGGATCATGTCTTGATTCCTGTTGCCAAAGAATTTGGTCCTGACATCATCCTGATC
TCTGCAGGATTTGATGCAGCTATTGGTGATCCTCTTGGTGGATGTCGTGTTAGTCCATAT
GGATATTCTGTGATGTTGCACAAGTTGTTGGAGTTTGCCGGAGGCAAGATTGTAATGGCA
CTAGAAGGCGGATATAATCTGGAGTCTATAGCAAATTCTGTCCAAGCTTGTATTGAAGTG
TTACTAAAGCAAAAACCGATTGCTGGATCTTCTGAGGCATATCCATTTGAATCCACATGG
CGAGTGATACAGGCTGTACGTGACAAATTGAGTGCATTTTGGCAACCACTTACTGAGAGA
TTAACGGAAAAAACAACTAGTATGAGAACTCCTTACATTCAGGCCATTAGCTCTGATTCT
GAAGATGAGTACGATACCTCTCAGACGGTATCGCAAGAACTCGAGAAGGATATTGAGAAT
ATCATACAACCATTTTCAGACCTGAAAGTTAATGATGGTCAAGCATGCACAATTTCTCAC
ACTTGGAGGGCAGAGCTTTCGAAGATTGATATATGGTATGCCACATTTGGGTCAAATATG
TATCAATCAAGGTTCCTTTGCTATATTGCAGGAGGACAGGTGGAAGGCATGCAAAAGCCA
TGTATTGGTTCGTTGGATAAAAGCAAGCCAAAGGAGATCATATGGAAAACTTTTCCTCAT
CGTTTGTTCTTTGCTCGCGAGCGTACAACTACATGGGGTCCGGGTGGGGTTGCTTTTCTT
CACCCTGAAAGCAACAGTGAAGAAAAAGCTTATATGTGCCTATATAGGATAACGCTTGAG
CAATTTAATGATGTTTTACTTCAAGAGAATGTTACGAACTTTGACATGAACTCCCCTTTG
TTTGACATGACTGACTTACAATCTATTGAAAACAGCAAATGTGTTTCAGCAGAGGCTGTC
AAGAATGGCTGGTACCATAATGTTCTTTACCTTGGAAAGGAGAATGGTCTTCCTATTTTG
ACAATGACATGCCAACTCTCAGATATTGATAACTTCAAATCAGGTAAAGTACTTATGTGC
AAACCATCTAAAGAATATGCCAATACTCTGATTAGAGGGTTGGTAGAAGGAAAGCAGCTC
TCAGAAGAGGAAGCCACCATTTACATACAAGAAGCAGCTAGCAGAGTATTGTGA

Peptide Sequence

PEP ID

XP_016489204.1
PEP Infomation

PREDICTED: histone deacetylase 5-like [Nicotiana tabacum]
Sequence

MGILTDNRVFFFGXKIGLKRNKIAAKFNSIYFNEGSSEAAYLSAGSVVQVAEKVAEGELD
SAFAVVRPPGHHAEENEPMGFCLYNNVAIAARYLLDERHDLGIKKILIVDWDVHHGNGTQ
KMFWDDPRVLFFSVHRHDFGSFYPGGEDGSHVMTGEGPGAGYNINVPWENGRCGDADYLA
VWDHVLIPVAKEFGPDIILISAGFDAAIGDPLGGCRVSPYGYSVMLHKLLEFAGGKIVMA
LEGGYNLESIANSVQACIEVLLKQKPIAGSSEAYPFESTWRVIQAVRDKLSAFWQPLTER
LTEKTTSMRTPYIQAISSDSEDEYDTSQTVSQELEKDIENIIQPFSDLKVNDGQACTISH
TWRAELSKIDIWYATFGSNMYQSRFLCYIAGGQVEGMQKPCIGSLDKSKPKEIIWKTFPH
RLFFARERTTTWGPGGVAFLHPESNSEEKAYMCLYRITLEQFNDVLLQENVTNFDMNSPL
FDMTDLQSIENSKCVSAEAVKNGWYHNVLYLGKENGLPILTMTCQLSDIDNFKSGKVLMC
KPSKEYANTLIRGLVEGKQLSEEEATIYIQEAASRVL

Transcript Sequence

Gene sequence data has not been registered.